Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55580.1Sporulation and spore germination. (299 aa)    
Predicted Functional Partners:
yycG
Sensor histidine kinase YycG.
  
  
 0.777
yycF
Transcriptional regulatory protein YycF.
     
 0.668
selB
Selenocysteine-specific elongation factor.
       0.654
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.631
OPJ55096.1
Chromosome segregation protein.
  
     0.588
cpdA_2
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
  
     0.586
OPJ55639.1
Hypothetical protein.
  
     0.584
OPJ55257.1
Hypothetical protein.
  
     0.579
OPJ57090.1
Flagellar hook-length control protein FliK.
  
     0.572
OPJ55094.1
Hypothetical protein.
  
     0.563
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.