Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55582.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
OPJ55257.1
Hypothetical protein.
  
     0.772
OPJ57256.1
Hypothetical protein.
  
     0.771
OPJ56305.1
Hypothetical protein.
  
     0.765
hemH
Ferrochelatase.
  
     0.763
OPJ57244.1
Hypothetical protein.
  
     0.756
OPJ57089.1
Hypothetical protein.
  
     0.745
OPJ55639.1
Hypothetical protein.
  
     0.744
OPJ56757.1
Hypothetical protein.
  
     0.736
OPJ55237.1
Hypothetical protein.
  
     0.724
oadG
Oxaloacetate decarboxylase gamma chain.
  
     0.710
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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