Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ55593.1ComEC family competence protein. (432 aa)    
Predicted Functional Partners:
OPJ55587.1
ComEC family competence protein.
   
 0.944
OPJ57303.1
Hypothetical protein.
 
  
 0.884
OPJ55594.1
DNA polymerase III subunit delta.
 
   
 0.879
prs_1
Ribose-phosphate pyrophosphokinase.
 
  
 0.859
rbn
Ribonuclease BN.
       0.784
comM
Competence protein ComM.
 
  
 0.776
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
     
 0.604
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
   
  
 0.599
epsF
Type II secretion system protein F.
   
  
 0.563
hmpT
Thiamine precursor transporter HmpT.
       0.558
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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