rnhB protein (Clostridium thermoalcaliphilum)

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Score

rnhB

Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (259 aa)

Predicted Functional Partners:

polA_1

0.939

dnaN

0.904

flhB_2

0.899

rbgA

0.882

OPJ55641.1

0.842

rnhA

0.839

comM

0.827

hndA_1

0.813

hndC_1

0.809

hndC_2

0.809

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55641.1	comM	CLOTH_14000	CLOTH_14010	Hypothetical protein; Belongs to the UPF0102 family.	Competence protein ComM.	0.942
OPJ55641.1	flhB_2	CLOTH_14000	CLOTH_13990	Hypothetical protein; Belongs to the UPF0102 family.	Flagellar biosynthetic protein FlhB.	0.842
OPJ55641.1	rbgA	CLOTH_14000	CLOTH_13960	Hypothetical protein; Belongs to the UPF0102 family.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.736
OPJ55641.1	rnhB	CLOTH_14000	CLOTH_13970	Hypothetical protein; Belongs to the UPF0102 family.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.842
comM	OPJ55641.1	CLOTH_14010	CLOTH_14000	Competence protein ComM.	Hypothetical protein; Belongs to the UPF0102 family.	0.942
comM	flhB_2	CLOTH_14010	CLOTH_13990	Competence protein ComM.	Flagellar biosynthetic protein FlhB.	0.771
comM	rbgA	CLOTH_14010	CLOTH_13960	Competence protein ComM.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.724
comM	rnhB	CLOTH_14010	CLOTH_13970	Competence protein ComM.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.827
dnaN	polA_1	CLOTH_15210	CLOTH_12690	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.995
dnaN	rnhA	CLOTH_15210	CLOTH_09930	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.529
dnaN	rnhB	CLOTH_15210	CLOTH_13970	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.904
flhB_2	OPJ55641.1	CLOTH_13990	CLOTH_14000	Flagellar biosynthetic protein FlhB.	Hypothetical protein; Belongs to the UPF0102 family.	0.842
flhB_2	comM	CLOTH_13990	CLOTH_14010	Flagellar biosynthetic protein FlhB.	Competence protein ComM.	0.771
flhB_2	rbgA	CLOTH_13990	CLOTH_13960	Flagellar biosynthetic protein FlhB.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.736
flhB_2	rnhB	CLOTH_13990	CLOTH_13970	Flagellar biosynthetic protein FlhB.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.899
hndA_1	hndC_1	CLOTH_04650	CLOTH_04660	NADP-reducing hydrogenase subunit HndA.	NADP-reducing hydrogenase subunit HndC.	0.999
hndA_1	hndC_2	CLOTH_04650	CLOTH_07660	NADP-reducing hydrogenase subunit HndA.	NADP-reducing hydrogenase subunit HndC.	0.999
hndA_1	polA_1	CLOTH_04650	CLOTH_12690	NADP-reducing hydrogenase subunit HndA.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.410
hndA_1	rnhB	CLOTH_04650	CLOTH_13970	NADP-reducing hydrogenase subunit HndA.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.813
hndC_1	hndA_1	CLOTH_04660	CLOTH_04650	NADP-reducing hydrogenase subunit HndC.	NADP-reducing hydrogenase subunit HndA.	0.999