Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55648.1Hypothetical protein. (587 aa)    
Predicted Functional Partners:
OPJ55652.1
Hypothetical protein.
 
    0.948
OPJ55645.1
Hypothetical protein.
 
     0.862
OPJ55646.1
Hypothetical protein.
 
     0.862
OPJ55651.1
Hypothetical protein.
       0.835
OPJ55649.1
Hypothetical protein.
       0.833
ftsK
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
     
 0.779
OPJ56036.1
Blue-light-activated protein.
   
 0.763
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.760
cysH
Thioredoxin-dependent 5'-adenylylsulfate reductase.
 
     0.757
csd_1
Putative cysteine desulfurase.
       0.722
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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