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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerBCSpore germination protein B3 precursor. (386 aa)    
Predicted Functional Partners:
gerAB
Spore germination protein A2.
 
  
 0.958
gerBA_2
Spore germination protein B1.
 
  
 0.956
gerBA_3
Spore germination protein B1.
 
  
 0.803
yndE
Spore germination protein YndE.
 
  
 0.795
OPJ55382.1
Hypothetical protein.
       0.773
ypeB
Sporulation protein YpeB.
 
     0.753
ytfJ
Putative spore protein YtfJ.
  
     0.706
sleB_3
Spore cortex-lytic enzyme precursor.
  
    0.660
gerBA_1
Spore germination protein B1.
  
  
 0.631
OPJ56867.1
PRC-barrel domain protein.
  
    0.618
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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