Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
gerBA_2Spore germination protein B1. (511 aa)    
Predicted Functional Partners:
gerBC
Spore germination protein B3 precursor.
 
  
 0.955
gerAB
Spore germination protein A2.
 
  
 0.941
spoVAD
Stage V sporulation protein AD.
  
  
 0.782
OPJ56725.1
SpoVA protein.
  
  
 0.778
gerAC
Spore germination protein A3 precursor.
 
  
 0.776
OPJ56727.1
SpoVA protein.
  
  
 0.774
OPJ55382.1
Hypothetical protein.
       0.773
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.772
spoIVB
SpoIVB peptidase precursor.
  
     0.771
sigE
RNA polymerase sigma-35 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.765
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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