cph2 protein (Clostridium thermoalcaliphilum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

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gene fusions

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Score

cph2

Phytochrome-like protein cph2. (552 aa)

Predicted Functional Partners:

ydaM_1

0.998

gmr

0.994

ydaM_2

0.984

OPJ56036.1

0.982

kinE

0.979

rpfG_3

0.942

yegE

0.912

adrA

0.907

ycgR

0.893

cheR

0.850

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ56036.1	adrA	CLOTH_12140	CLOTH_15920	Blue-light-activated protein.	Putative diguanylate cyclase AdrA.	0.764
OPJ56036.1	cheR	CLOTH_12140	CLOTH_04810	Blue-light-activated protein.	Chemotaxis protein methyltransferase.	0.965
OPJ56036.1	cph2	CLOTH_12140	CLOTH_14430	Blue-light-activated protein.	Phytochrome-like protein cph2.	0.982
OPJ56036.1	gmr	CLOTH_12140	CLOTH_17900	Blue-light-activated protein.	Cyclic di-GMP phosphodiesterase Gmr.	0.995
OPJ56036.1	kinE	CLOTH_12140	CLOTH_12130	Blue-light-activated protein.	Sporulation kinase E.	0.999
OPJ56036.1	rpfG_3	CLOTH_12140	CLOTH_15990	Blue-light-activated protein.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.973
OPJ56036.1	ydaM_1	CLOTH_12140	CLOTH_10170	Blue-light-activated protein.	Putative diguanylate cyclase YdaM.	0.997
OPJ56036.1	ydaM_2	CLOTH_12140	CLOTH_14220	Blue-light-activated protein.	Putative diguanylate cyclase YdaM.	0.980
OPJ56036.1	yegE	CLOTH_12140	CLOTH_19760	Blue-light-activated protein.	Putative diguanylate cyclase YegE.	0.756
adrA	OPJ56036.1	CLOTH_15920	CLOTH_12140	Putative diguanylate cyclase AdrA.	Blue-light-activated protein.	0.764
adrA	cph2	CLOTH_15920	CLOTH_14430	Putative diguanylate cyclase AdrA.	Phytochrome-like protein cph2.	0.907
adrA	gmr	CLOTH_15920	CLOTH_17900	Putative diguanylate cyclase AdrA.	Cyclic di-GMP phosphodiesterase Gmr.	0.863
adrA	kinE	CLOTH_15920	CLOTH_12130	Putative diguanylate cyclase AdrA.	Sporulation kinase E.	0.857
adrA	rpfG_3	CLOTH_15920	CLOTH_15990	Putative diguanylate cyclase AdrA.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.499
adrA	ydaM_1	CLOTH_15920	CLOTH_10170	Putative diguanylate cyclase AdrA.	Putative diguanylate cyclase YdaM.	0.608
cheR	OPJ56036.1	CLOTH_04810	CLOTH_12140	Chemotaxis protein methyltransferase.	Blue-light-activated protein.	0.965
cheR	cph2	CLOTH_04810	CLOTH_14430	Chemotaxis protein methyltransferase.	Phytochrome-like protein cph2.	0.850
cheR	gmr	CLOTH_04810	CLOTH_17900	Chemotaxis protein methyltransferase.	Cyclic di-GMP phosphodiesterase Gmr.	0.970
cheR	kinE	CLOTH_04810	CLOTH_12130	Chemotaxis protein methyltransferase.	Sporulation kinase E.	0.963
cheR	rpfG_3	CLOTH_04810	CLOTH_15990	Chemotaxis protein methyltransferase.	Cyclic di-GMP phosphodiesterase response regulator RpfG.	0.651