STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yusV_2Putative siderophore transport system ATP-binding protein YusV. (263 aa)    
Predicted Functional Partners:
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.989
btuF
Vitamin B12-binding protein precursor.
 
 0.979
feuB
Iron-uptake system permease protein FeuB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.965
yfhA
Putative siderophore transport system permease protein YfhA; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.963
OPJ55400.1
Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.954
yfmC
Fe(3+)-citrate-binding protein YfmC precursor.
 
 0.942
yfiY
Putative siderophore-binding lipoprotein YfiY precursor.
 
 0.863
znuA
High-affinity zinc uptake system binding-protein ZnuA precursor; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.465
OPJ55390.1
DegV domain-containing protein.
       0.455
znuB
High-affinity zinc uptake system membrane protein ZnuB.
    
 0.409
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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