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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmuUHemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (350 aa)    
Predicted Functional Partners:
yusV_2
Putative siderophore transport system ATP-binding protein YusV.
 
 0.989
btuF
Vitamin B12-binding protein precursor.
 
 0.988
yfmC
Fe(3+)-citrate-binding protein YfmC precursor.
 
 0.958
yusV_1
Putative siderophore transport system ATP-binding protein YusV.
 
 0.952
OPJ55399.1
Putative ABC transporter ATP-binding protein.
 
 0.952
yfiY
Putative siderophore-binding lipoprotein YfiY precursor.
 
 0.869
OPJ54972.1
Hypothetical protein.
  
 0.794
feuB
Iron-uptake system permease protein FeuB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
0.483
nasF
uroporphyrinogen-III C-methyltransferase.
     
 0.470
OPJ55390.1
DegV domain-containing protein.
       0.455
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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