pstS1 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pstS1

Phosphate-binding protein PstS 1 precursor. (294 aa)

Predicted Functional Partners:

pstB3

0.999

pstA

0.999

pstC

0.999

OPJ55407.1

0.916

OPJ56380.1

0.851

nifJ

0.719

guaA

0.713

ribBA

0.581

pheT

0.571

OPJ56036.1

0.553

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55407.1	pstA	CLOTH_14650	CLOTH_14670	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstA.	0.983
OPJ55407.1	pstB3	CLOTH_14650	CLOTH_14660	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.987
OPJ55407.1	pstC	CLOTH_14650	CLOTH_14680	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.942
OPJ55407.1	pstS1	CLOTH_14650	CLOTH_14690	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate-binding protein PstS 1 precursor.	0.916
OPJ56036.1	guaA	CLOTH_12140	CLOTH_11700	Blue-light-activated protein.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.689
OPJ56036.1	pstA	CLOTH_12140	CLOTH_14670	Blue-light-activated protein.	Phosphate transport system permease protein PstA.	0.432
OPJ56036.1	pstB3	CLOTH_12140	CLOTH_14660	Blue-light-activated protein.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.500
OPJ56036.1	pstS1	CLOTH_12140	CLOTH_14690	Blue-light-activated protein.	Phosphate-binding protein PstS 1 precursor.	0.553
OPJ56036.1	ribBA	CLOTH_12140	CLOTH_14300	Blue-light-activated protein.	Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.933
OPJ56380.1	pstA	CLOTH_07840	CLOTH_14670	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstA.	0.949
OPJ56380.1	pstB3	CLOTH_07840	CLOTH_14660	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.954
OPJ56380.1	pstC	CLOTH_07840	CLOTH_14680	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate transport system permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.825
OPJ56380.1	pstS1	CLOTH_07840	CLOTH_14690	Hypothetical protein; Plays a role in the regulation of phosphate uptake.	Phosphate-binding protein PstS 1 precursor.	0.851
guaA	OPJ56036.1	CLOTH_11700	CLOTH_12140	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Blue-light-activated protein.	0.689
guaA	pheT	CLOTH_11700	CLOTH_16780	GMP synthase; Catalyzes the synthesis of GMP from XMP.	phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.922
guaA	pstA	CLOTH_11700	CLOTH_14670	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Phosphate transport system permease protein PstA.	0.415
guaA	pstB3	CLOTH_11700	CLOTH_14660	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.621
guaA	pstS1	CLOTH_11700	CLOTH_14690	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Phosphate-binding protein PstS 1 precursor.	0.713
guaA	ribBA	CLOTH_11700	CLOTH_14300	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.824
nifJ	pstS1	CLOTH_01250	CLOTH_14690	Pyruvate-flavodoxin oxidoreductase.	Phosphate-binding protein PstS 1 precursor.	0.719