Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
vanYD-alanyl-D-alanine carboxypeptidase. (238 aa)    
Predicted Functional Partners:
dacF_3
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.783
spoVD_1
Stage V sporulation protein D.
     
 0.782
spoVD_3
Stage V sporulation protein D.
     
 0.744
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.719
dacF_1
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.693
spoVD_2
Stage V sporulation protein D.
     
 0.678
mrcA
Penicillin-binding protein 1A.
     
  0.634
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.552
OPJ55415.1
Hypothetical protein.
  
    0.507
OPJ55560.1
gamma-D-glutamyl-L-diamino acid endopeptidase 1.
    
  0.444
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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