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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycJPutative metallo-hydrolase YycJ. (264 aa)    
Predicted Functional Partners:
htrB
Serine protease Do-like HtrB.
  
  
 0.831
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
     0.808
OPJ55419.1
Tetratricopeptide repeat protein.
       0.711
mepM_2
Murein DD-endopeptidase MepM.
       0.599
pepN
Aminopeptidase N.
       0.485
OPJ55417.1
Hypothetical protein.
       0.484
polA_1
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.450
purL
Phosphoribosylformylglycinamidine synthase 2.
       0.438
albA_2
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
  
  
 0.404
OPJ55424.1
Replication initiation and membrane attachment.
       0.400
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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