STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55424.1Replication initiation and membrane attachment. (347 aa)    
Predicted Functional Partners:
dnaI
Primosomal protein DnaI.
 
  
 0.968
OPJ56397.1
Hypothetical protein.
  
     0.762
ftsL_1
Cell division protein FtsL.
  
     0.748
ycf3
Photosystem I assembly protein Ycf3.
 
     0.743
OPJ55168.1
Hypothetical protein.
  
     0.692
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
  
     0.682
OPJ55237.1
Hypothetical protein.
  
     0.672
pepN
Aminopeptidase N.
 
     0.653
OPJ56765.1
Hypothetical protein.
  
     0.648
ndx1_1
Diadenosine hexaphosphate hydrolase.
  
     0.638
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.