Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55443.1Hypothetical protein. (350 aa)    
Predicted Functional Partners:
OPJ55442.1
Colicin V production protein.
 
     0.929
OPJ56041.1
Hypothetical protein.
  
     0.771
OPJ57089.1
Hypothetical protein.
  
     0.769
OPJ56879.1
HlyD family secretion protein.
  
     0.768
OPJ55639.1
Hypothetical protein.
  
     0.768
OPJ57088.1
Flagellar biosynthesis chaperone.
  
     0.766
OPJ55248.1
Hypothetical protein.
  
     0.754
OPJ55167.1
Hypothetical protein.
  
     0.725
OPJ55441.1
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
       0.720
OPJ55444.1
Tetratricopeptide repeat protein.
 
     0.718
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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