Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
csd_2Putative cysteine desulfurase. (381 aa)    
Predicted Functional Partners:
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
  
 0.970
parB_2
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
  
    0.758
soj
Sporulation initiation inhibitor protein Soj.
       0.755
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
  
 0.723
OPJ55441.1
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.712
trxB_2
Thioredoxin reductase.
  
 
  0.661
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.602
noc
Nucleoid occlusion protein; Belongs to the ParB family.
  
    0.588
OPJ55444.1
Tetratricopeptide repeat protein.
  
   0.584
trxB_1
Thioredoxin reductase.
  
 
  0.580
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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