Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OPJ55452.1 | misCA | CLOTH_15150 | CLOTH_15160 | R3H domain protein. | Membrane protein insertase MisCA precursor. | 0.951 |
| OPJ55452.1 | rho | CLOTH_15150 | CLOTH_15840 | R3H domain protein. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.598 |
| OPJ55452.1 | rnpA | CLOTH_15150 | CLOTH_15180 | R3H domain protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.921 |
| OPJ55452.1 | rpmH | CLOTH_15150 | CLOTH_15190 | R3H domain protein. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.638 |
| OPJ55452.1 | spoIIAA | CLOTH_15150 | CLOTH_00010 | R3H domain protein. | Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.664 |
| OPJ55452.1 | yidD | CLOTH_15150 | CLOTH_15170 | R3H domain protein. | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.874 |
| metG | misCA | CLOTH_17300 | CLOTH_15160 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Membrane protein insertase MisCA precursor. | 0.545 |
| metG | serS | CLOTH_17300 | CLOTH_20030 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.795 |
| metG | spoIIAA | CLOTH_17300 | CLOTH_00010 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.545 |
| metG | yidD | CLOTH_17300 | CLOTH_15170 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.634 |
| misCA | OPJ55452.1 | CLOTH_15160 | CLOTH_15150 | Membrane protein insertase MisCA precursor. | R3H domain protein. | 0.951 |
| misCA | metG | CLOTH_15160 | CLOTH_17300 | Membrane protein insertase MisCA precursor. | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.545 |
| misCA | rho | CLOTH_15160 | CLOTH_15840 | Membrane protein insertase MisCA precursor. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.704 |
| misCA | rnpA | CLOTH_15160 | CLOTH_15180 | Membrane protein insertase MisCA precursor. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.931 |
| misCA | rpmH | CLOTH_15160 | CLOTH_15190 | Membrane protein insertase MisCA precursor. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.760 |
| misCA | secE | CLOTH_15160 | CLOTH_18730 | Membrane protein insertase MisCA precursor. | Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.958 |
| misCA | yidD | CLOTH_15160 | CLOTH_15170 | Membrane protein insertase MisCA precursor. | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.904 |
| rho | OPJ55452.1 | CLOTH_15840 | CLOTH_15150 | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | R3H domain protein. | 0.598 |
| rho | misCA | CLOTH_15840 | CLOTH_15160 | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Membrane protein insertase MisCA precursor. | 0.704 |
| rho | rnpA | CLOTH_15840 | CLOTH_15180 | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.758 |
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