STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55230.1DNA-binding transcriptional regulator DhaR. (200 aa)    
Predicted Functional Partners:
kinE
Sporulation kinase E.
    
 0.866
OPJ56036.1
Blue-light-activated protein.
  
  
 0.682
ctpB
Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.
       0.559
ygeX
Diaminopropionate ammonia-lyase.
  
     0.556
OPJ55619.1
Hypothetical protein.
  
     0.517
zraR
Transcriptional regulatory protein ZraR.
 
     0.506
envC
Murein hydrolase activator EnvC precursor.
    
  0.502
rocR
Arginine utilization regulatory protein RocR.
 
     0.501
ydaM_1
Putative diguanylate cyclase YdaM.
    
 0.499
OPJ56416.1
Serine dehydratase alpha chain; Belongs to the UPF0597 family.
 
     0.497
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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