Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctpBCarboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family. (381 aa)    
Predicted Functional Partners:
envC
Murein hydrolase activator EnvC precursor.
 
  
 0.821
ycf3
Photosystem I assembly protein Ycf3.
  
 
 0.786
ftsX
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
     0.716
OPJ57307.1
Hypothetical protein.
  
 
 0.696
yerB
Putative lipoprotein YerB precursor.
  
 
 0.696
OPJ55755.1
Hypothetical protein.
  
 
 0.696
mepH
Murein DD-endopeptidase MepH precursor.
   
 
 0.692
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 
 0.688
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.677
OPJ55397.1
Hypothetical protein.
    
 
 0.672
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (14%) [HD]