STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
putPSodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (476 aa)    
Predicted Functional Partners:
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.888
cstA
Carbon starvation protein A.
 
    0.752
dapE
Putative succinyl-diaminopimelate desuccinylase.
 
     0.697
OPJ56036.1
Blue-light-activated protein.
  
 
 0.669
kinE
Sporulation kinase E.
  
 
 0.666
argF_1
Ornithine carbamoyltransferase.
 
   
 0.614
ygeX
Diaminopropionate ammonia-lyase.
 
    0.603
oadG
Oxaloacetate decarboxylase gamma chain.
  
  
 0.592
artM
Arginine transport ATP-binding protein ArtM.
  
  
 0.588
gltP
Proton glutamate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
  
 0.522
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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