Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ygeXDiaminopropionate ammonia-lyase. (403 aa)    
Predicted Functional Partners:
dapE
Putative succinyl-diaminopimelate desuccinylase.
 
 0.960
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.951
argF_1
Ornithine carbamoyltransferase.
 
  
 0.787
ilvE
Branched-chain-amino-acid aminotransferase.
  
 0.742
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.691
putP
Sodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.604
ltaA
L-allo-threonine aldolase.
   
 
 0.566
OPJ55230.1
DNA-binding transcriptional regulator DhaR.
  
     0.556
sdhB
L-serine dehydratase, beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
 
 0.554
lysC
Aspartokinase; Belongs to the aspartokinase family.
  
 0.550
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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