Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ55248.1Hypothetical protein. (685 aa)    
Predicted Functional Partners:
OPJ55247.1
Colanic acid biosynthesis protein.
 
    0.957
tagA
Putative N-acetylmannosaminyltransferase; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
 
   
 0.895
OPJ55245.1
Hypothetical protein.
       0.813
OPJ55443.1
Hypothetical protein.
  
     0.754
OPJ56041.1
Hypothetical protein.
  
     0.732
OPJ55249.1
Hypothetical protein.
 
     0.719
tktA
Transketolase 1.
       0.684
dxs_2
1-deoxy-D-xylulose-5-phosphate synthase.
       0.673
OPJ57089.1
Hypothetical protein.
  
     0.658
OPJ56879.1
HlyD family secretion protein.
  
     0.648
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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