STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spo0FSporulation initiation phosphotransferase F. (121 aa)    
Predicted Functional Partners:
OPJ55444.1
Tetratricopeptide repeat protein.
    
 0.984
kinE
Sporulation kinase E.
  
  
  0.965
OPJ56036.1
Blue-light-activated protein.
  
  
 0.914
fliN
Flagellar motor switch protein FliN.
    
  0.893
puuR
HTH-type transcriptional regulator PuuR.
    
  0.812
cseB
Transcriptional regulatory protein CseB.
  
 
  0.799
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
  
  
  0.795
mcpB_5
Methyl-accepting chemotaxis protein McpB.
 
  
  0.787
spo0A_1
Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
 
  0.766
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
       0.751
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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