Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
swrCSwarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1031 aa)    
Predicted Functional Partners:
macA
Macrolide export protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.999
OPJ56879.1
HlyD family secretion protein.
  
 0.910
OPJ56764.1
Preprotein translocase subunit YajC.
  
 
 
 0.688
spo0F
Sporulation initiation phosphotransferase F.
 
     0.667
OPJ56036.1
Blue-light-activated protein.
 
 
 
 0.623
adrA
Putative diguanylate cyclase AdrA.
 
     0.549
mcpB_5
Methyl-accepting chemotaxis protein McpB.
       0.548
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
       0.534
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
      
 0.499
copA
Copper-exporting P-type ATPase A.
      
 0.499
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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