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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55297.1GH3 auxin-responsive promoter. (523 aa)    
Predicted Functional Partners:
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.952
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
     0.938
OPJ55298.1
Hypothetical protein.
  
    0.843
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.565
fapR
Transcription factor FapR.
  
 
 0.545
pepF1_2
Oligoendopeptidase F, plasmid.
       0.511
OPJ55294.1
Hypothetical protein.
       0.508
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
  
 
  0.494
OPJ55299.1
Membrane dipeptidase.
       0.477
OPJ55149.1
Fluoroquinolones export permease proteinc.
  
     0.461
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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