STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55298.1Hypothetical protein. (195 aa)    
Predicted Functional Partners:
OPJ55297.1
GH3 auxin-responsive promoter.
  
    0.843
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
       0.834
asrC_1
Anaerobic sulfite reductase subunit C.
   
 
  0.570
OPJ55294.1
Hypothetical protein.
       0.527
pepF1_2
Oligoendopeptidase F, plasmid.
       0.511
cdr
Coenzyme A disulfide reductase.
    
 0.489
glpE
Thiosulfate sulfurtransferase GlpE.
    
 0.489
OPJ55299.1
Membrane dipeptidase.
       0.477
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.447
OPJ56396.1
Hypothetical protein.
    
  0.416
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.