Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OPJ55299.1Membrane dipeptidase. (320 aa)    
Predicted Functional Partners:
OPJ55300.1
Hypothetical protein.
       0.547
OPJ55297.1
GH3 auxin-responsive promoter.
       0.477
OPJ55298.1
Hypothetical protein.
       0.477
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
       0.474
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.446
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
       0.438
rny_2
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.423
cpg2
Carboxypeptidase G2 precursor.
 
  
 0.407
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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