STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lnpDUDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (342 aa)    
Predicted Functional Partners:
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
 
  
 0.975
epsH
Putative glycosyltransferase EpsH.
 
   
 0.890
epsD
Putative glycosyltransferase EpsD.
 
  
 0.854
OPJ55315.1
Glycosyl transferases group 1.
    
 0.829
OPJ55312.1
Polysaccharide biosynthesis protein.
     
 0.827
ndhI_3
NAD(P)H-quinone oxidoreductase subunit I.
 
     0.818
OPJ55313.1
Polysaccharide pyruvyl transferase.
     
 0.785
pglC
Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase.
    
 0.757
OPJ55316.1
O-antigen ligase.
     
 0.754
pglD
UDP-N-acetylbacillosamine N-acetyltransferase.
     
 0.670
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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