Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ywqDTyrosine-protein kinase YwqD. (237 aa)    
Predicted Functional Partners:
cap8A
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 0.999
ywqE
Tyrosine-protein phosphatase YwqE.
  
 0.995
pglC
Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase.
 
 
 0.962
hndA_1
NADP-reducing hydrogenase subunit HndA.
    
 0.900
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
 
 0.894
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.874
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
 0.874
ywtF
Putative transcriptional regulator YwtF.
  
  
 0.627
OPJ55322.1
Hypothetical protein.
       0.625
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.595
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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