Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cap8ACapsular polysaccharide type 8 biosynthesis protein cap8A. (225 aa)    
Predicted Functional Partners:
ywqD
Tyrosine-protein kinase YwqD.
 0.999
ywqE
Tyrosine-protein phosphatase YwqE.
 
 
 0.992
pglC
Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase.
 
  
 0.925
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
  
 0.839
ywtF
Putative transcriptional regulator YwtF.
  
  
 0.631
OPJ55322.1
Hypothetical protein.
       0.621
OPJ55312.1
Polysaccharide biosynthesis protein.
  
  
 0.507
OPJ55313.1
Polysaccharide pyruvyl transferase.
 
    0.474
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.462
epsD
Putative glycosyltransferase EpsD.
  
  
 0.411
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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