cshA_2 protein (Clostridium thermoalcaliphilum)

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Score

cshA_2

DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. (531 aa)

Predicted Functional Partners:

pnp

0.909

ppiB

0.873

rplC

0.862

rplD

0.834

rbgA

0.807

rplM

0.794

rplJ

0.793

rsmB

0.788

rplK

0.785

rpmD

0.781

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cshA_2	pnp	CLOTH_16330	CLOTH_04230	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.909
cshA_2	ppiB	CLOTH_16330	CLOTH_11270	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.873
cshA_2	rbgA	CLOTH_16330	CLOTH_13960	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.807
cshA_2	rplC	CLOTH_16330	CLOTH_18590	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.862
cshA_2	rplD	CLOTH_16330	CLOTH_18580	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.834
cshA_2	rplJ	CLOTH_16330	CLOTH_18690	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.793
cshA_2	rplK	CLOTH_16330	CLOTH_18710	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.785
cshA_2	rplM	CLOTH_16330	CLOTH_18240	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.794
cshA_2	rpmD	CLOTH_16330	CLOTH_18410	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	50S ribosomal protein L30.	0.781
cshA_2	rsmB	CLOTH_16330	CLOTH_01910	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.788
pnp	cshA_2	CLOTH_04230	CLOTH_16330	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	0.909
pnp	rbgA	CLOTH_04230	CLOTH_13960	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.630
pnp	rplC	CLOTH_04230	CLOTH_18590	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.893
pnp	rplD	CLOTH_04230	CLOTH_18580	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.911
pnp	rplJ	CLOTH_04230	CLOTH_18690	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.772
pnp	rplK	CLOTH_04230	CLOTH_18710	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.658
pnp	rplM	CLOTH_04230	CLOTH_18240	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.592
pnp	rpmD	CLOTH_04230	CLOTH_18410	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L30.	0.616
pnp	rsmB	CLOTH_04230	CLOTH_01910	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.623
ppiB	cshA_2	CLOTH_11270	CLOTH_16330	Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	0.873