Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
polC_3DNA polymerase III PolC-type. (305 aa)    
Predicted Functional Partners:
nudG
CTP pyrophosphohydrolase; Belongs to the Nudix hydrolase family.
  
    0.561
yjcD
Putative ATP-dependent DNA helicase YjcD.
 
     0.526
OPJ55237.1
Hypothetical protein.
  
     0.493
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
  
     0.449
hemH
Ferrochelatase.
  
     0.446
OPJ56056.1
Anti-sigma28 factor FlgM.
  
     0.433
OPJ55940.1
Hypothetical protein.
  
     0.432
prsW
Protease PrsW.
  
     0.426
ycf3
Photosystem I assembly protein Ycf3.
 
    0.422
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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