Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycf3Photosystem I assembly protein Ycf3. (375 aa)    
Predicted Functional Partners:
OPJ55444.1
Tetratricopeptide repeat protein.
 
 0.927
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.923
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.874
OPJ55168.1
Hypothetical protein.
 
     0.817
ctpB
Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.
  
 
 0.786
miaB_2
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
       0.778
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
 
 
   0.771
OPJ55424.1
Replication initiation and membrane attachment.
 
     0.743
OPJ55237.1
Hypothetical protein.
  
     0.741
cheY_1
Chemotaxis protein CheY.
  
 
 0.727
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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