STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaB_2tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase. (585 aa)    
Predicted Functional Partners:
ycf3
Photosystem I assembly protein Ycf3.
       0.778
OPJ55516.1
Hypothetical protein.
    
  0.654
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
    
  0.646
OPJ55167.1
Hypothetical protein.
       0.537
pta_1
Phosphate acetyltransferase.
       0.452
OPJ55162.1
Indolepyruvate oxidoreductase subunit beta.
  
    0.439
ssbA_1
Single-stranded DNA-binding protein A.
   
    0.433
OPJ55163.1
Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.433
hemZ
Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ.
 
  
 0.426
OPJ55168.1
Hypothetical protein.
       0.409
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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