Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55167.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
OPJ55168.1
Hypothetical protein.
 
     0.816
OPJ56041.1
Hypothetical protein.
  
     0.757
OPJ55443.1
Hypothetical protein.
  
     0.725
OPJ55366.1
Hypothetical protein.
  
     0.651
OPJ57089.1
Hypothetical protein.
  
     0.641
OPJ54640.1
Hypothetical protein.
  
     0.630
OPJ55248.1
Hypothetical protein.
  
     0.618
OPJ57088.1
Flagellar biosynthesis chaperone.
  
     0.599
ycf3
Photosystem I assembly protein Ycf3.
 
     0.596
OPJ57096.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.594
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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