Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55047.1NurA domain protein. (316 aa)    
Predicted Functional Partners:
OPJ55048.1
AAA-like domain protein.
 
 
 
 0.991
cpdA_2
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
 
     0.803
OPJ55094.1
Hypothetical protein.
 
   
 0.801
OPJ55096.1
Chromosome segregation protein.
 
   
 0.801
abrB
Transition state regulatory protein AbrB.
       0.591
sspH
Small, acid-soluble spore protein H.
  
     0.531
OPJ55580.1
Sporulation and spore germination.
  
     0.516
OPJ55516.1
Hypothetical protein.
  
     0.446
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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