Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spmASpore maturation protein A. (190 aa)    
Predicted Functional Partners:
spmB
Spore maturation protein B.
  
 0.999
OPJ56939.1
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.667
mtnX
2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase.
       0.642
dacF_3
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
  
  
 0.636
crp
cAMP receptor protein.
       0.615
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.550
OPJ55597.1
Stage II sporulation protein SpoIIP.
  
   
 0.537
OPJ56937.1
Stage III sporulation protein SpoAB.
   
  
 0.534
OPJ56936.1
Hypothetical protein; Transcription termination factor Rho.
  
  
 0.530
OPJ56938.1
Stage III sporulation protein AC/AD protein family protein.
   
  
 0.524
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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