Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55070.1Hypothetical protein. (369 aa)    
Predicted Functional Partners:
OPJ54801.1
LysM domain protein.
  
 
 
 0.827
OPJ55237.1
Hypothetical protein.
  
     0.772
OPJ56765.1
Hypothetical protein.
  
     0.771
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.770
OPJ56941.1
Stage III sporulation protein SpoIIIAF.
  
     0.764
OPJ55090.1
Spore cortex protein YabQ.
  
     0.756
ydcC
Sporulation protein YdcC.
  
   
 0.754
OPJ56074.1
Hypothetical protein.
  
     0.749
hemH
Ferrochelatase.
  
     0.747
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.747
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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