spoVB_2 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

spoVB_2

Stage V sporulation protein B. (532 aa)

Predicted Functional Partners:

OPJ57287.1

0.669

glnA_1

0.647

spoVT

0.642

glnA_2

0.629

mazG

0.606

trmK

0.598

OPJ55088.1

0.460

OPJ56766.1

0.458

sigH

0.458

hup

0.447

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55088.1	hup	CLOTH_17530	CLOTH_17520	Ribosome-associated heat shock protein Hsp15.	DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	0.845
OPJ55088.1	mazG	CLOTH_17530	CLOTH_17510	Ribosome-associated heat shock protein Hsp15.	Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.	0.817
OPJ55088.1	spoVB_2	CLOTH_17530	CLOTH_17500	Ribosome-associated heat shock protein Hsp15.	Stage V sporulation protein B.	0.460
OPJ55088.1	spoVT	CLOTH_17530	CLOTH_17490	Ribosome-associated heat shock protein Hsp15.	Stage V sporulation protein T.	0.484
OPJ56766.1	spoVB_2	CLOTH_00480	CLOTH_17500	Hypothetical protein.	Stage V sporulation protein B.	0.458
OPJ57287.1	spoVB_2	CLOTH_05700	CLOTH_17500	Hypothetical protein; Belongs to the UPF0297 family.	Stage V sporulation protein B.	0.669
OPJ57287.1	trmK	CLOTH_05700	CLOTH_03370	Hypothetical protein; Belongs to the UPF0297 family.	tRNA (adenine(22)-N(1))-methyltransferase.	0.737
glnA_1	spoVB_2	CLOTH_04480	CLOTH_17500	Glutamine synthetase.	Stage V sporulation protein B.	0.647
glnA_2	spoVB_2	CLOTH_15960	CLOTH_17500	Glutamine synthetase.	Stage V sporulation protein B.	0.629
hup	OPJ55088.1	CLOTH_17520	CLOTH_17530	DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Ribosome-associated heat shock protein Hsp15.	0.845
hup	mazG	CLOTH_17520	CLOTH_17510	DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.	0.681
hup	spoVB_2	CLOTH_17520	CLOTH_17500	DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Stage V sporulation protein B.	0.447
hup	spoVT	CLOTH_17520	CLOTH_17490	DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Stage V sporulation protein T.	0.522
mazG	OPJ55088.1	CLOTH_17510	CLOTH_17530	Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.	Ribosome-associated heat shock protein Hsp15.	0.817
mazG	hup	CLOTH_17510	CLOTH_17520	Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.	DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	0.681
mazG	spoVB_2	CLOTH_17510	CLOTH_17500	Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.	Stage V sporulation protein B.	0.606
mazG	spoVT	CLOTH_17510	CLOTH_17490	Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG.	Stage V sporulation protein T.	0.594
sigH	spoVB_2	CLOTH_18770	CLOTH_17500	RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.	Stage V sporulation protein B.	0.458
spoVB_2	OPJ55088.1	CLOTH_17500	CLOTH_17530	Stage V sporulation protein B.	Ribosome-associated heat shock protein Hsp15.	0.460
spoVB_2	OPJ56766.1	CLOTH_17500	CLOTH_00480	Stage V sporulation protein B.	Hypothetical protein.	0.458