Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yabPSpore protein YabP. (85 aa)    
Predicted Functional Partners:
OPJ55090.1
Spore cortex protein YabQ.
 
  
 0.985
spoIIE
Stage II sporulation protein E.
 
     0.881
ftsL_2
Cell division protein FtsL.
  
  
 0.862
OPJ56990.1
Putative stage IV sporulation protein YqfD.
 
   
 0.837
spoVT
Stage V sporulation protein T.
 
     0.825
ylbJ
Sporulation integral membrane protein YlbJ.
  
   
 0.822
OPJ55088.1
Ribosome-associated heat shock protein Hsp15.
  
    0.810
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.806
OPJ54808.1
Stage II sporulation protein SpoIIR.
  
  
 0.804
OPJ56936.1
Hypothetical protein; Transcription termination factor Rho.
  
  
 0.783
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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