Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55090.1Spore cortex protein YabQ. (143 aa)    
Predicted Functional Partners:
yabP
Spore protein YabP.
 
  
 0.985
ftsL_2
Cell division protein FtsL.
 
    0.890
OPJ55088.1
Ribosome-associated heat shock protein Hsp15.
  
    0.871
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.826
OPJ56765.1
Hypothetical protein.
  
     0.757
OPJ55070.1
Hypothetical protein.
  
     0.756
spoIIE
Stage II sporulation protein E.
 
     0.744
OPJ54801.1
LysM domain protein.
  
     0.740
ppx
Exopolyphosphatase.
       0.729
OPJ56074.1
Hypothetical protein.
  
     0.724
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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