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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55090.1Spore cortex protein YabQ. (143 aa)    
Predicted Functional Partners:
yabP
Spore protein YabP.
 
  
 0.969
ftsL_2
Cell division protein FtsL.
 
    0.875
OPJ55088.1
Ribosome-associated heat shock protein Hsp15.
  
    0.811
OPJ56765.1
Hypothetical protein.
  
     0.757
spoIIE
Stage II sporulation protein E.
 
     0.757
OPJ55070.1
Hypothetical protein.
  
     0.756
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.752
OPJ54801.1
LysM domain protein.
  
     0.740
OPJ56074.1
Hypothetical protein.
  
     0.724
ppx
Exopolyphosphatase.
       0.720
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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