Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
opuDGlycine betaine transporter OpuD; Belongs to the BCCT transporter (TC 2.A.15) family. (498 aa)    
Predicted Functional Partners:
grdH_2
Betaine reductase complex component B subunit beta.
       0.698
grdI
Betaine reductase complex component B subunit alpha.
 
     0.587
sigX
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
       0.531
OPJ54962.1
Hypothetical protein.
       0.531
grdH_1
Betaine reductase complex component B subunit beta.
       0.528
OPJ54963.1
Hypothetical protein.
       0.517
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.489
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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