STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnmE_2tRNA modification GTPase MnmE. (409 aa)    
Predicted Functional Partners:
bioB
Biotin synthase.
   
 0.991
thiH_2
2-iminoacetate synthase.
   
 0.990
OPJ54972.1
Hypothetical protein.
 
   
 0.962
hndD_3
NADP-reducing hydrogenase subunit HndC.
 
   
 0.866
hndD_1
NADP-reducing hydrogenase subunit HndC.
 
   
 0.779
hndD_2
NADP-reducing hydrogenase subunit HndC.
 
   
 0.778
gpsA
Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.740
thiH_1
2-iminoacetate synthase.
   
 0.731
dnaG_1
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
    0.638
dnaG_2
DNA primase.
   
    0.638
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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