Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
focAPutative formate transporter 1. (276 aa)    
Predicted Functional Partners:
hndA_1
NADP-reducing hydrogenase subunit HndA.
  
  
 0.655
hndC_3
NADP-reducing hydrogenase subunit HndC.
  
  
 0.639
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.620
nasF
uroporphyrinogen-III C-methyltransferase.
     
 0.592
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
  
 0.574
hndC_2
NADP-reducing hydrogenase subunit HndC.
  
  
 0.574
fhs
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
  
  
 0.549
gmr
Cyclic di-GMP phosphodiesterase Gmr.
     
 0.535
nifJ
Pyruvate-flavodoxin oxidoreductase.
      
 0.530
hndD_3
NADP-reducing hydrogenase subunit HndC.
  
  
 0.454
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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