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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmrCyclic di-GMP phosphodiesterase Gmr. (808 aa)    
Predicted Functional Partners:
OPJ56036.1
Blue-light-activated protein.
 0.998
cph2
Phytochrome-like protein cph2.
 
0.998
ydaM_1
Putative diguanylate cyclase YdaM.
 
0.997
kinE
Sporulation kinase E.
  
 0.997
ydaM_2
Putative diguanylate cyclase YdaM.
 
0.995
cheR
Chemotaxis protein methyltransferase.
 
 
 0.957
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
0.903
cheB
Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.902
yegE
Putative diguanylate cyclase YegE.
 
0.900
adrA
Putative diguanylate cyclase AdrA.
 
0.899
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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