Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54993.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
OPJ54991.1
Sodium:neurotransmitter symporter family protein; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
     0.898
rlmCD_2
23S rRNA (uracil-C(5))-methyltransferase RlmCD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.603
OPJ54992.1
Hypothetical protein.
       0.586
OPJ56323.1
Hypothetical protein.
  
     0.584
OPJ55444.1
Tetratricopeptide repeat protein.
  
     0.521
OPJ55442.1
Colicin V production protein.
  
     0.517
OPJ55167.1
Hypothetical protein.
  
     0.485
nfo_2
Endonuclease 4.
  
     0.445
dppA
Periplasmic dipeptide transport protein precursor.
  
     0.429
OPJ55619.1
Hypothetical protein.
  
     0.424
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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