Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54999.1Hypothetical protein. (623 aa)    
Predicted Functional Partners:
OPJ56190.1
Hypothetical protein.
  
     0.736
OPJ55000.1
Hypothetical protein.
 
     0.665
OPJ56519.1
Hypothetical protein.
  
     0.610
OPJ54997.1
Restriction endonuclease.
 
     0.570
OPJ55906.1
Hypothetical protein.
  
     0.533
OPJ56199.1
Hypothetical protein.
  
     0.528
OPJ54998.1
Hypothetical protein.
       0.512
OPJ55911.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.507
OPJ55916.1
HTH domain protein.
 
    0.498
OPJ55909.1
DNA polymerase II.
 
     0.476
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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