close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwlDGermination-specific N-acetylmuramoyl-L-alanine amidase precursor. (235 aa)    
Predicted Functional Partners:
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 0.918
ydcC
Sporulation protein YdcC.
    
 
 0.915
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
0.769
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
  
  
 
0.761
yaaH_1
Spore germination protein YaaH.
    
 0.702
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.602
OPJ56211.1
Hypothetical protein.
  
    0.590
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 
 
0.557
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.548
OPJ54962.1
Hypothetical protein.
    
   0.513
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.