Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cwlDGermination-specific N-acetylmuramoyl-L-alanine amidase precursor. (235 aa)    
Predicted Functional Partners:
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 0.894
ydcC
Sporulation protein YdcC.
    
 
 0.877
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
  
  
 
0.715
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
0.700
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 
 
0.690
yaaH_1
Spore germination protein YaaH.
    
 0.680
envC
Murein hydrolase activator EnvC precursor.
 
 
   0.622
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.584
yabP
Spore protein YabP.
  
  
 0.572
lytB_2
Amidase enhancer precursor.
 
 0.531
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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