Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
arcAArginine deiminase. (410 aa)    
Predicted Functional Partners:
arcC1
Carbamate kinase 1; Belongs to the carbamate kinase family.
 
  
 0.995
argF_2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 
 0.994
argF_1
Ornithine carbamoyltransferase.
 
 
 0.872
OPJ54793.1
Hypothetical protein.
 
  
 0.843
argH
Argininosuccinate lyase.
     
 0.724
OPJ54794.1
Putative dipeptidase.
 
  
 0.722
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.703
speA_1
Arginine decarboxylase.
     
 0.683
speA_2
Arginine decarboxylase.
     
 0.677
dapE
Putative succinyl-diaminopimelate desuccinylase.
    
 0.644
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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