Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
arcC1Carbamate kinase 1; Belongs to the carbamate kinase family. (311 aa)    
Predicted Functional Partners:
argF_2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.996
arcA
Arginine deiminase.
 
  
 0.995
argF_1
Ornithine carbamoyltransferase.
 
 0.917
glsA2
Glutaminase 2; Belongs to the glutaminase family.
     
  0.862
pyrB
Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
 0.840
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
     
 0.788
carB
Carbamoyl-phosphate synthase large chain.
     
  0.787
OPJ54793.1
Hypothetical protein.
 
   
 0.733
pyrI
Aspartate carbamoyltransferase regulatory chain.
    
  0.649
glnA_1
Glutamine synthetase.
     
 0.638
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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